About

I am a passionate cosmologist dedicated to unraveling the mysteries of the universe, with a focus on galaxy formation and its connection to cosmology. My research spans from exploring the conditions in the early universe and the emergence of first light sources to studying the distribution of matter across the cosmos. Through my work, I strive to contribute valuable insights into the fundamental nature of our universe and its captivating evolution over time.

Image source: A new rendition of the Flammarion engraving created with the help of Dr H. E. Ross for the cover page of my PhD thesis. The Flammarion engraving is an allegory representing humanity's curiosity and fascination with the universe, as well as the desire to explore and understand it. Our version envisions that the Square Kilometre Array (SKA) will play a pivotal role in advancing our quest for understanding the cosmos. This creation was featured in SKA observatory's magazine, Contact issue 01.

Research

I primarily focus on two topics, which are the cosmic reionization and modeling baryonic feedback processes in large-scale observations. I also develop state-of-art data analysis tools using the latest machine learning methods. Below I give a highlight of my research interests. Here I list the content of this page:

Cosmic reionization

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About 50 million years after the birth of our universe, the first luminous sources formed. I seek signatures of these sources and study how they reionized gas in the intergalactic medium (IGM) of our universe. Above I show an example of the reionization in a simulation volume of with a length of 714 Mpc (see Giri & Mellema 2021 for details). The ionization state of the IGM is shown in the left panel. One can see the ionized regions (black) growing, merging and finally filling the entire universe. One interesting probe of this process is the 21-cm signal, which is produced by neutral hydrogen due to the spin-flip transition of its ground state. The right panel shows the corresponding 21-cm signal. The ionized regions are seen as absence of signal (dark-blue) in the map.

Modelling method

Numerical simulations
We simulate cosmic reionization by post-processing N-body simulation outputs with radiative transfer simulation code. One such code is called C2Ray (Mellema et al. 2006) that solves the transport of photons from luminous sources in three dimensions. With this method, we can accurately simulate very large simulation volumes (∼1 Gpc) that is very difficult to achieve with hydrodynamical simulation methods (e.g. Giri et al. 2019b; Giri & Mellema 2021). The figure below shows slices from such a large-scale reionization simulation. slices_Giri2019

Analytical simulations
In order to interpret 21-cm signal observations, we need a fast modelling method. In Schneider, Giri & Mirocha (2021), we introduced a halo-model based approach to model the 21-cm signal. In the figure below, we compare the power spectra derived from our halo-model based approach assuming exponential and extended Press-Schechter halo accretion (solid and dash-dotted lines) with that from 21cmFAST code (colored bands). HM21cm_Schneider2021

The 21-cm signal

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The 21-cm signal produced by the neutral hydrogen gas present in the intergalactic medium (IGM) during reionization contains a treasure-trove of information about the reionization process. Within the Low-frequency Array (LOFAR) Epoch of Reionization Science team, we are attempting to measure the strength of spatial fluctuations in the signal (or the power spectrum). We have provided the tighest upper limit at a redshift of 9 (Mertens et al. 2020) and constrained the properties of the IGM using this observation (Ghara, Giri et al. 2020). In the right panel above, we show the LOFAR upper limits (red points) along with many reionization models (coloured lines). We see that there are some model that violate the observed upper limits. In the left panel, we show a slice from an excluded model model (blue dashed power spectrum given in the right panel).

Going beyond the power spectrum

The 21-cm signal from the epoch of reionization is highly non-Gaussian. Therefore the power spectrum cannot completely characterise this signal. We have studied various metrics that can probe the non-Gaussian information (see my PhD thesis for more discussion). Here I show few such summary statistics that can be estimated from the SKA-like image data.

Bubble size distributions
bsds_Giri2018 The bubble size distribution (BSD) measures the probability of sizes of the ionized regions (bubbles) during reionization. The BSD shows the growth of these bubbles at different epochs of reionization. The above figure in taken from Giri et al. (2018a), where the BSDs are shown for different models of reionization.

Betti numbers
betti_Giri2021 The Betti numbers quantify the morphology of different structures. In Giri & Mellema (2021), we used the Betti numbers to study the morphology of ionized regions identified in 21-cm image data. The zeroth, first and second Betti numbers give the number of isolated structures, tunnels and enclosed voids respectively. The above figure taken from Giri & Mellema (2021) shows the evolution of the three Betti numbers as reionization progresses in three different models.

Position dependent power spectrum
PdPS_Giri2019 The Position dependent power spectrum (PdPS) measures the response of small-scale fluctuations to the large-scale fluctuations, which is pictorially shown in the left panel of the above figure. PdPS is mathematically equivalent to the integrated squeezed-limit bispectrum. The right panel of the above figure is taken from Giri et al. (2019a) for various reionization models.

Bispectrum
bispec_Watkinson2019 The bispectrum is a higher-order summary statistics. It is the Fourier counterpart of the three point correlation function. The above figure is taken from Watkinson et al. (2019). The left panel gives a visual representation of the structures probed by the bispectrum and the right panel gives the equilateral bispectrum calulated from the simulations of the time when first sources formed and heated the gas in the IGM.

Baryonic feedback process

I also work on understanding the small-scale baryonic feedback processes that affects the observations of large-scale structures, such as the weak-lensing observations.

Modelling method

The dark matter around dark matter haloes (where the visible objects, such as galaxies and clusters, reside) follow the NFW profile (Navarro, Frenk & White 1996). Due to the astrophysical processes inside haloes, the baryons are redistributed and thus do not follow the NFW profile (e.g. van Daalen et al. 2011). We model the impact of baryonic feedback processes on large-scale observations by parameterising the density of baryons around haloes (see figure below). These profiles can be constrained by galaxy observations (e.g. Schneider et al. 2019; Debackere et al. 2020; Giri & Schneider 2021). matter_profiles

In N-body simulations
We displace the particles in dark matter (N-body) simulations outputs such that the matter profiles match the baryonic profile. In this process, we introduce new parameters that describe the baryonic profile. For details, see Schneider & Teyssier (2015). This method is computationally inexpensive compared to hydrodynamical simulations. We can derive the large-scale observables, such as the power spectrum and bispectrum, from the dispalced N-body simulations. In the figure below (taken from Giri & Schneider 2021), we show the ratio of power spectra from dark-matter-baryon and dark-matter-only simulations (power spectrum suppressions) at two redshifts. Here we fit the power spectrum suppressions from hydrodynamical simulations with our fast method. Sk_bcm

Baryonic correction emulators

Even though the modelling of baryonic feedback processes by displacing N-body simulations is computationally cheap, it is not fast enough to be used in a statistical inference framework to analyse observations. Therefore emulators of the observables using machine learning methods are helpful in achieving this task (Arico et al. 2021; Giri & Schneider 2021). We build an emulator for modelling the suppression in power spectrum due to baryonic feedback processes, which is publicly available named BCemu. In the figure below (taken from Schneider et al. 2022), we show the constraints on cosmological parameters (S8 and Ωm) using the KiDS-1000 release of weak lensing data. We study the impact of baryonic feedback processes on these constraints by including X-ray and kinematic Sunyaev-Zeldovich observations of galaxy clusters with the weak lensing data. S8Om_Xray_kSZ

Machine learning tools

I frequently implement advanced data analysis methods, such as machine learning, in my research work. I am also involved in developing new machine learning architecture conducive for Big data produced in the field of astronomy.

Analysing high-redshift galaxy spectra

Recently, the JWST started observing the high-redshift galaxies. It will provide us with huge amount of galaxy spectra, and tranditional analysis methods will be time consuming. Therefore, I developed a machine learning-based framework to identify Lyman continuum leaking galaxies from large data sets of spectra (Giri et al. 2020).

Building suggorate models

Machine learning-based surrogate models are a very useful way on speeding up any computationally expensive modelling method. We developed several surrogate models or emulators. Here I list these emulators:

  • 21-cm signal power spectrum (Ghara, Giri et al. 2020)
  • Impact of baryonic feedback processes on the matter power spectrum (Giri & Schneider 2021)
  • Non-standard dark matter models
    • Cold+warm dark matter (Parimbelli et al. 2021)
    • Decaying dark matter (Bucko, Giri, Schneider 2023)

Structure identification

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The upcoming Square Kilometre Array (SKA) will revolutionize the field by producing images of distribution of neutral hydrogen during reionization using the 21-cm signal. In the left panel of the above image, I show an expected image from the SKA. An interesting information contained in such images is the ionized regions, where most of the luminous sources reside. Identifying these regions will not only help us understand the evolution of the reionization process (Giri et al. 2018a, 2019b; Giri & Mellema 2021) but also strategise complementary galaxy observations, such as Euclid, James Webb Space Telescope (JWST), Nancy Grace Roman Space Telescope and Extremely Large Telescope (ELT) (Zackrisson et al. 2020). We have developed techniques to identify meaningful features in noisy data (Giri et al. 2018b; Bianco et al. 2021). In the right panel of the above image, I show the true ionized regions (red) and the regions identified by one of our methods (green boundaries). These methods along with the tools to create mock SKA images are packaged into an open-source framework, Tools21cm.

Foreground mitigation for 21-cm signal

One of the most difficult contaminants of the 21-cm signal observations from the epoch of reionization is the foregrounds that will be orders of magnitude higher in strength. We are developing a machine learning-based foreground mitigation framework. Currently, we developed SegU-Net v2.0 (Bianco, Giri, et al 2023) that will be able to identify structures in 21-cm signal image data contaminated with foreground.

Curriculum vitae

Please find the detailed CV at this link (last updated: 15 July 2024). Here I give a glimpse of my career.

  • Oct 2022 – Present: Nordita fellow, Nordic Institute for Theoretical Physics (Nordita), Stockholm
  • Jan 2020 – Sep 2022: Postdoctoral researcher, Institute for Computational Science, University of Zurich
  • Apr 2019 – Dec 2020: Postdoctoral researcher, Department of Astronomy, Stockholm University
  • Oct 2015 – Apr 2019: Doctoral student, Department of Astronomy, Stockholm University.
    Title: Tomographic studies of the 21-cm signal during reionization (advisor: Prof. Garrelt Mellema)
  • Jul 2010 – May 2015: Integrated master of technology in Engineering physics, Indian Institute of Technology (Banaras Hindu University), India.
    Title: Study of dynamic events on solar photosphere (advisor: Dr. Anita Mohan)

Collaborations

  • SKA: Involved in the SKA reionization science team
  • LOFAR: Involved in the reionization theory and simulations
  • Euclid: Involved in theory and simulations working group

Teaching and Supervision

  • Nov 2022 - Jan 2023: Teacher of Cosmology course at the Department of Astronomy, Stockholm University
  • Jan 2020 - Sep 2022: Co-supervision of five master's theses (Jonathan Hubert, Zhongnan Cai, Chrishon Nilanthan, Fabian Hervas Peters, Michael Kovac); Co-supervision of two semester projects (Felix Vecchi, Christina Fakiola)
  • Feb 2022 - May 2022: Teaching assistant in the Advanced simulation methods in Natural Sciences course at the Institute for Computational Science, University of Zurich, Switzerland
  • Oct 2015 - Dec 2019: Co-supervision of two bachelor's theses (Thomas Aldheimer, Eric Fredriksson); Co-supervision of one master’s thesis (Ancel Larzul)
  • Jan 2015 - Apr 2015: Teaching assistant in the Mechanics Lab at the Department of Physics, Indian Institute of Technology (BHU), Varanasi, India
  • Aug 2014 - Nov 2014: Teaching assistant in the Electromagnetic Theory & Wave Guides course at the Department of Physics, Indian Institute of Technology (BHU), Varanasi, India

Contact

Address:
Nordic Institute for Theoretical Physics,
Hannes Alfvéns väg 12,
SE-106 91 Stockholm

Email me at: sambit.giri [at] su.se

Publications

Below I list my first- and second-author paper. For my full publication list, choose one of the following links:

Here I list my first author papers:

  1. Giri S. K., Bianco M., Schaeffer T., Iliev I. T., Mellema G., & Schneider A. (2024). The 21-cm signal during the end stages of reionization. Monthly Notices of the Royal Astronomical Society, 533(2), 2364-2378.
  2. Giri S. K., & Schneider A. (2023). BCMemu: Model baryonic effects in cosmological simulations. Astrophysics Source Code Library, record ascl:2308.010.
  3. Giri S. K., Schneider A., Maion F., & Angulo R. E. (2022). Suppressing variance in 21-cm signal simulations during reionization. Astronomy & Astrophysics, 669, A6.
  4. Giri S. K., & Schneider A. (2022). Imprints of fermionic and bosonic mixed dark matter on the 21-cm signal at cosmic dawn. Physical Review D, 105(8), 083011.
  5. Giri S. K., & Schneider A. (2021). Emulation of baryonic effects on the matter power spectrum and constraints from galaxy cluster data. Journal of Cosmology and Astroparticle Physics, 2021(12), 046.
  6. Giri S. K., & Mellema G. (2021). Measuring the topology of reionization with Betti numbers. Monthly Notices of the Royal Astronomical Society, 505(2), 1863-1877.
  7. Giri S., Mellema G., & Jensen H. (2020). Tools21cm: A python package to analyse the large-scale 21-cm signal from the Epoch of Reionization and Cosmic Dawn. Journal of Open Source Software, 5(52), 2363.
  8. Giri S. K., Zackrisson E., Binggeli C., Pelckmans K., & Cubo R. (2020). Identifying reionization-epoch galaxies with extreme levels of Lyman continuum leakage in James Webb Space Telescope surveys. Monthly Notices of the Royal Astronomical Society, 491(4), 5277-5286.
  9. Giri S. K., Mellema G., Aldheimer T., Dixon K. L., & Iliev I. T. (2019). Neutral island statistics during reionization from 21-cm tomography. Monthly Notices of the Royal Astronomical Society, 489(2), 1590-1605.
  10. Giri S. K., d'Aloisio A., Mellema G., Komatsu E., Ghara R., & Majumdar S. (2019). Position-dependent power spectra of the 21-cm signal from the epoch of reionization. Journal of Cosmology and Astroparticle Physics, 2019(02), 058.
  11. Giri S. K., Zackrisson E., Binggeli C., Pelckmans K., Cubo R., & Mellema G. (2018). Constraining Lyman continuum escape using Machine Learning. Proceedings of the International Astronomical Union, IAU Symposium, Volume 333, pp. 254-258.
  12. Giri S. K., Mellema G., & Ghara R. (2018). Optimal identification of H II regions during reionization in 21-cm observations. Monthly Notices of the Royal Astronomical Society, 479(4), 5596-5611.
  13. Giri S. K., Mellema G., Dixon K. L., & Iliev I. T. (2018). Bubble size statistics during reionization from 21-cm tomography. Monthly Notices of the Royal Astronomical Society, 473(3), 2949-2964.

Here I list my second author papers:

  1. Bianco, M., Giri, S. K., Sharma, R., Chen, T., Parth Krishna, S., Finlay, C., Nistane, V., Denzel, P., De Santis, M., Ghorbel, H. (2024). Deep learning approach for identification of HII regions during reionization in 21-cm observations -- III. image recovery. arXiv:2408.16814.
  2. Schaeffer, T., Giri, S. K., & Schneider, A., (2024). Testing common approximations to predict the 21cm signal at the Epoch of Reionization and Cosmic Dawn. Physical Review D, 110(2), 023543.
  3. He, Y., Giri, S. K., Sharma, R., Mtchedlidze, S., & Georgiev, I., (2024). Inverse Gertsenshtein effect as a probe of high-frequency gravitational waves. Journal of Cosmology and Astroparticle Physics, 2024(05), 051.
  4. Dayal P., & Giri S. K. (2024). Warm dark matter constraints from the JWST. Monthly Notices of the Royal Astronomical Society, 528(2), 2784-2789.
  5. Bianco M., Giri S. K., Prelogović D., Chen T., Mertens F. G., Tolley E., Mesinger A. & Kneib J.P. (2024). Deep learning approach for identification of HII regions during reionization in 21-cm observations--II. foreground contamination. Monthly Notices of the Royal Astronomical Society, 528(3), 5212-5230.
  6. Bucko J., Giri, S. K. & Schneider A. (2024). Probing the two-body decaying dark matter scenario with weak lensing and the cosmic microwave background. Astronomy & Astrophysics, 683, A152.
  7. Schaeffer T., Giri S. K. & Schneider A. (2023). BEoRN: A fast and flexible framework to simulate the epoch of reionisation and cosmic dawn. Monthly Notices of the Royal Astronomical Society, 526(2), 2942-2959.
  8. Nebrin O., Giri S. K., & Mellema G. (2023). Starbursts in low-mass haloes at Cosmic Dawn. I. The critical halo mass for star formation. Monthly Notices of the Royal Astronomical Society, 524(2), 2290-2311.
  9. Bucko J., Giri, S. K., & Schneider A. (2022). Constraining dark matter decays with cosmic microwave background and weak lensing shear observations. Astronomy & Astrophysics, 672, A157.
  10. Schneider A., Giri S. K., Amodeo S., & Refregier A. (2022). Constraining baryonic feedback and cosmology with weak-lensing, X-ray, and kinematic Sunyaev–Zeldovich observations. Monthly Notices of the Royal Astronomical Society, 514(3), 3802-3814.
  11. Ross H. E., Giri S. K., Mellema G., Dixon K. L., Ghara R., & Iliev I. T. (2021). Redshift-space distortions in simulations of the 21-cm signal from the cosmic dawn. Monthly Notices of the Royal Astronomical Society, 506(3), 3717-3733.
  12. Bianco M., Giri S. K., Iliev I. T., & Mellema G. (2021). Deep learning approach for identification of H II regions during reionization in 21-cm observations. Monthly Notices of the Royal Astronomical Society, 505(3), 3982-3997.
  13. Ghara R., Giri S. K., Ciardi B., Mellema G., & Zaroubi S. (2021). Constraining the state of the intergalactic medium during the Epoch of Reionization using MWA 21-cm signal observations. Monthly Notices of the Royal Astronomical Society, 503(3), 4551-4562.
  14. Schneider A., Giri S. K., & Mirocha J. (2021). Halo model approach for the 21-cm power spectrum at cosmic dawn. Physical Review D, 103(8), 083025.
  15. Ghara R., Giri S. K., Mellema G., Ciardi B., Zaroubi S., Iliev I. T., ... & Yatawatta, S. (2020). Constraining the intergalactic medium at z≈ 9.1 using LOFAR Epoch of Reionization observations. Monthly Notices of the Royal Astronomical Society, 493(4), 4728-4747.
  16. Watkinson C. A., Giri S. K., Ross H. E., Dixon K. L., Iliev I. T., Mellema G., & Pritchard J. R. (2019). The 21-cm bispectrum as a probe of non-Gaussianities due to X-ray heating. Monthly Notices of the Royal Astronomical Society, 482(2), 2653-2669.

Codes

I have developed and helped in improvement of various simulation codes and data analysis packages. Here are a few packages that are open-source:

  • AstronomyCalc: A python package containing the tools for basic calculations required in astronomy and cosmology. This package is designed for helping teach these calculations to university students.
  • BCemu: A python package for modelling baryonic effects in cosmological simulations.
  • BEoRN: A flexible and parallelised code to simulate large-scale cosmological simulations of the epoch of reionization and cosmic dawn.
  • CosmoSpectra: A package for Fourier analysis (power spectrum, bispectrum, etc) of cosmological simulations.
  • pyC2Ray: A flexible and GPU-accelerated radiative transfer framework to simulate large-scale cosmological simulations of the epoch of reionization and cosmic dawn.
  • Tools21cm: A python package for analysing 21-cm signals from the Epoch of Reionization (EoR) and Cosmic Dawn (CD).

My work also depends on numerous nice open-source codes and packages developed by other groups. Here is a (incomplete) list of such codes:

  • NumPy: A library for the Python programming language, adding support for large, multi-dimensional arrays and matrices, along with a large collection of high-level mathematical functions to operate on these arrays.
  • SciPy: A free and open-source Python library used for scientific computing and technical computing.
  • Matplotlib: A comprehensive library for creating static, animated, and interactive visualizations in Python.
  • Astropy: A collection of software packages written in the Python programming language and designed for use in astronomy.
  • Joblib: A set of tools to provide lightweight pipelining in Python.
  • scikit-image: A collection of algorithms for image processing.
  • scikit-learn: A free software machine learning library for the Python programming language.
  • 21cmFAST: A semi-numerical code for fast simulation of the epoch of reionization and cosmic dawn.
  • TensorFlow: A free and open-source software library for machine learning and artificial intelligence.
  • PyTorch: A machine learning framework based on the Torch library, an open-source framework for machine learning and scientific computing.

For teaching concepts involving mathematical calculations and data analysis, I like to employ Jupyter notebooks. Here are links to a few Jupyter notebooks:

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