Index

A

ABC_gpL (class in psiphy.sbi.abc_gp) acceptance_fraction (psiphy.mcmc.mh_sampler.MHSampler property)

add_modelling_error() (psiphy.forecasting.fisher.FisherMatrix method) analytic_posterior() (psiphy.toy_models.gaussian.GaussianSignal method) autocorr_time() (psiphy.mcmc.mh_sampler.MHSampler method)

B

bandwidth_kde_scott() (in module psiphy.utils.kernel_density) bandwidth_kde_silverman() (in module psiphy.utils.kernel_density)

bandwidth_kdeCV() (in module psiphy.utils.kernel_density) BasePrior (class in psiphy.utils.prior) BOLFI (class in psiphy.sbi.bolfi)

C

cache_info() (psiphy.forecasting.fisher.FisherMatrix method) check_inside_nsphere() (in module psiphy.utils.bayesian_opt) compute() (psiphy.forecasting.fisher.FisherMatrix method) confidence_bound() (in module psiphy.utils.bayesian_opt) contour_2D() (in module psiphy.plotting.mcmc_chains) convergence_test_delta_frac() (psiphy.forecasting.fisher.FisherMatrix method)

corner_density() (in module psiphy.plotting.corner) correlation_matrix() (psiphy.forecasting.fisher.FisherMatrix method) create_dataset() (psiphy.sbi.abc_gp.ABC_gpL method) credible_limit() (in module psiphy.plotting.corner) cross_val_loss_kdeCV_kFold() (in module psiphy.utils.kernel_density) cross_val_loss_kdeCV_loo() (in module psiphy.utils.kernel_density)

D

density_1D() (in module psiphy.plotting.corner) (in module psiphy.plotting.mcmc_chains)

density_2D() (in module psiphy.plotting.corner) (in module psiphy.plotting.mcmc_chains) draw_nsphere_surface() (in module psiphy.utils.bayesian_opt)

E

eff_sample_size() (in module psiphy.mcmc.importance_sampling) ellipse_params() (psiphy.forecasting.fisher.FisherMatrix method) emceeSRE (class in psiphy.sbi.sre)

estimate_covariance() (psiphy.forecasting.fisher.FisherMatrix method) estimate_derivatives() (psiphy.forecasting.fisher.FisherMatrix method) expected_improvement() (in module psiphy.utils.bayesian_opt)

F

find_intervals() (in module psiphy.plotting.corner) (in module psiphy.plotting.mcmc_chains)

FisherMatrix (class in psiphy.forecasting.fisher)

G

gaussian_signal (in module psiphy.toy_models.gaussian) GaussianPrior (class in psiphy.utils.prior) GaussianSignal (class in psiphy.toy_models.gaussian) get_acquisition() (in module psiphy.utils.bayesian_opt) get_chain() (psiphy.mcmc.mh_sampler.MHSampler method)

get_CI_HDR_1D() (in module psiphy.plotting.corner) (in module psiphy.plotting.mcmc_chains) get_CI_HDR_2D() (in module psiphy.plotting.corner) (in module psiphy.plotting.mcmc_chains) get_log_prob() (psiphy.mcmc.mh_sampler.MHSampler method) get_result() (psiphy.mcmc.nested_sampler.NestedSampler method)

I

importance_sampling() (in module psiphy.mcmc.importance_sampling)

in_support() (psiphy.utils.prior.BasePrior method)

J

js_distance() (in module psiphy.utils.distances)

K

kl_divergence() (in module psiphy.utils.distances)

L

learn_distance() (psiphy.sbi.abc_gp.ABC_gpL method) learn_distance_BO() (psiphy.sbi.abc_gp.ABC_gpL method) learn_likelihood() (psiphy.sbi.bolfi.BOLFI method) learn_logL_with_classifier() (psiphy.sbi.sre.emceeSRE method) learn_posterior() (psiphy.sbi.lfire.LFIRE method) LFIRE (class in psiphy.sbi.lfire) LH_sampling() (in module psiphy.utils.sampling_space) LHS_nsphere() (in module psiphy.utils.sampling_space) load() (psiphy.forecasting.fisher.FisherMatrix class method) (psiphy.mcmc.mh_sampler.MHSampler class method) load_likelihood_model() (psiphy.sbi.bolfi.BOLFI method) load_model() (in module psiphy.utils.helpers) (psiphy.sbi.bolfi.BOLFI method) (psiphy.sbi.lfire.LFIRE method) loading_verbose() (in module psiphy.utils.helpers) log_likelihood() (psiphy.sbi.bolfi.BOLFI method) (psiphy.sbi.lfire.LFIRE method)

log_posterior() (psiphy.sbi.bolfi.BOLFI method) (psiphy.sbi.lfire.LFIRE method) log_prob() (psiphy.toy_models.cosmological.PowerLawSpectrum method) (psiphy.toy_models.gaussian.GaussianSignal method) (psiphy.toy_models.line_fitting.NoisyLine method) (psiphy.toy_models.lotka_volterra.LotkaVolterra method) (psiphy.toy_models.ma2.MA2Model method) (psiphy.utils.prior.BasePrior method) (psiphy.utils.prior.GaussianPrior method) (psiphy.utils.prior.LogUniformPrior method) (psiphy.utils.prior.MixturePrior method) (psiphy.utils.prior.UniformPrior method) log_ratio() (psiphy.sbi.lfire.LFIRE method) LogUniformPrior (class in psiphy.utils.prior) LotkaVolterra (class in psiphy.toy_models.lotka_volterra)

M

MA2Model (class in psiphy.toy_models.ma2) MC_sampling() (in module psiphy.utils.sampling_space) MCS_nsphere() (in module psiphy.utils.sampling_space) MHSampler (class in psiphy.mcmc.mh_sampler) MixturePrior (class in psiphy.utils.prior) module psiphy.forecasting psiphy.forecasting.fisher psiphy.mcmc psiphy.mcmc.importance_sampling psiphy.mcmc.mh_sampler psiphy.mcmc.nested_sampler psiphy.plotting psiphy.plotting.corner psiphy.plotting.mcmc_chains psiphy.sbi psiphy.sbi.abc_gp psiphy.sbi.bolfi psiphy.sbi.lfire psiphy.sbi.rejection_abc psiphy.sbi.sre psiphy.toy_models psiphy.toy_models.cosmological psiphy.toy_models.gaussian psiphy.toy_models.line_fitting psiphy.toy_models.lotka_volterra psiphy.toy_models.ma2 psiphy.utils psiphy.utils.bayesian_opt psiphy.utils.distances psiphy.utils.helpers psiphy.utils.kernel_density psiphy.utils.prior psiphy.utils.sampling_space

N

n_simulations (psiphy.sbi.bolfi.BOLFI property) n_steps (psiphy.mcmc.mh_sampler.MHSampler property) names (psiphy.utils.prior.BasePrior attribute) ndim (psiphy.utils.prior.BasePrior property) (psiphy.utils.prior.GaussianPrior property) (psiphy.utils.prior.LogUniformPrior property) (psiphy.utils.prior.MixturePrior property) (psiphy.utils.prior.UniformPrior property)

NestedSampler (class in psiphy.mcmc.nested_sampler) noiseless() (psiphy.toy_models.lotka_volterra.LotkaVolterra method) noisy_line (in module psiphy.toy_models.line_fitting) NoisyLine (class in psiphy.toy_models.line_fitting)

P

param_names (psiphy.toy_models.cosmological.PowerLawSpectrum attribute) (psiphy.toy_models.gaussian.GaussianSignal attribute) (psiphy.toy_models.line_fitting.NoisyLine attribute) (psiphy.toy_models.lotka_volterra.LotkaVolterra attribute) (psiphy.toy_models.ma2.MA2Model attribute) plot_1Dmarginal() (in module psiphy.plotting.corner) plot_1Dmarginal_lfire() (in module psiphy.plotting.corner) plot_2d_power() (in module psiphy.plotting.mcmc_chains) plot_2Dmarginal() (in module psiphy.plotting.corner) plot_2Dmarginal_lfire() (in module psiphy.plotting.corner) plot_corner_dist() (in module psiphy.plotting.mcmc_chains) plot_corner_multiple_dist() (in module psiphy.plotting.mcmc_chains) plot_covariance() (psiphy.forecasting.fisher.FisherMatrix method) plot_derivatives() (psiphy.forecasting.fisher.FisherMatrix method) plot_dist_corner_getdist() (in module psiphy.plotting.mcmc_chains) plot_ellipses() (psiphy.forecasting.fisher.FisherMatrix method) plot_lfire() (in module psiphy.plotting.corner) posterior_grid() (psiphy.sbi.lfire.LFIRE method) PowerLawSpectrum (class in psiphy.toy_models.cosmological) predict_distance() (psiphy.sbi.bolfi.BOLFI method) prepare_distance_model() (psiphy.sbi.abc_gp.ABC_gpL method) print_CI_samples() (in module psiphy.plotting.corner) (in module psiphy.plotting.mcmc_chains) prior_transform() (psiphy.utils.prior.BasePrior method) (psiphy.utils.prior.GaussianPrior method) (psiphy.utils.prior.LogUniformPrior method) (psiphy.utils.prior.UniformPrior method) probability_of_improvement() (in module psiphy.utils.bayesian_opt) propose_location() (in module psiphy.utils.bayesian_opt) psiphy.forecasting module psiphy.forecasting.fisher module psiphy.mcmc module psiphy.mcmc.importance_sampling module psiphy.mcmc.mh_sampler module psiphy.mcmc.nested_sampler module psiphy.plotting module

psiphy.plotting.corner module psiphy.plotting.mcmc_chains module psiphy.sbi module psiphy.sbi.abc_gp module psiphy.sbi.bolfi module psiphy.sbi.lfire module psiphy.sbi.rejection_abc module psiphy.sbi.sre module psiphy.toy_models module psiphy.toy_models.cosmological module psiphy.toy_models.gaussian module psiphy.toy_models.line_fitting module psiphy.toy_models.lotka_volterra module psiphy.toy_models.ma2 module psiphy.utils module psiphy.utils.bayesian_opt module psiphy.utils.distances module psiphy.utils.helpers module psiphy.utils.kernel_density module psiphy.utils.prior module psiphy.utils.sampling_space module

R

rABC (class in psiphy.sbi.rejection_abc) ratio_estimation() (psiphy.sbi.sre.emceeSRE method) run() (psiphy.mcmc.mh_sampler.MHSampler method) (psiphy.mcmc.nested_sampler.NestedSampler method) (psiphy.sbi.rejection_abc.rABC method)

run_grid() (psiphy.sbi.lfire.LFIRE method) run_mcmc() (psiphy.sbi.abc_gp.ABC_gpL method) run_simulations() (psiphy.forecasting.fisher.FisherMatrix method)

S

sample() (psiphy.forecasting.fisher.FisherMatrix method) (psiphy.utils.prior.BasePrior method) (psiphy.utils.prior.GaussianPrior method) (psiphy.utils.prior.LogUniformPrior method) (psiphy.utils.prior.MixturePrior method) (psiphy.utils.prior.UniformPrior method) sample_posterior() (psiphy.sbi.bolfi.BOLFI method) (psiphy.sbi.lfire.LFIRE method) sample_prior() (psiphy.sbi.rejection_abc.rABC method) (psiphy.toy_models.cosmological.PowerLawSpectrum method) (psiphy.toy_models.gaussian.GaussianSignal method) (psiphy.toy_models.line_fitting.NoisyLine method) (psiphy.toy_models.lotka_volterra.LotkaVolterra method) (psiphy.toy_models.ma2.MA2Model method) save() (psiphy.forecasting.fisher.FisherMatrix method) save_likelihood_model() (psiphy.sbi.bolfi.BOLFI method) save_model() (in module psiphy.utils.helpers) (psiphy.sbi.bolfi.BOLFI method) (psiphy.sbi.lfire.LFIRE method)

sequential_importance_sampling() (in module psiphy.mcmc.importance_sampling) sequential_monte_carlo() (in module psiphy.mcmc.importance_sampling) set_obs() (psiphy.sbi.sre.emceeSRE method) set_postfix() (psiphy.forecasting.fisher.tqdm method) set_simulator() (psiphy.sbi.sre.emceeSRE method) sigma_1d() (psiphy.forecasting.fisher.FisherMatrix method) sigma_2d() (psiphy.forecasting.fisher.FisherMatrix method) sigma_conditional() (psiphy.forecasting.fisher.FisherMatrix method) simulate() (psiphy.toy_models.cosmological.PowerLawSpectrum method) (psiphy.toy_models.gaussian.GaussianSignal method) (psiphy.toy_models.line_fitting.NoisyLine method) (psiphy.toy_models.lotka_volterra.LotkaVolterra method) (psiphy.toy_models.ma2.MA2Model method) simulate_marginal() (psiphy.sbi.lfire.LFIRE method) simulate_raw() (psiphy.toy_models.ma2.MA2Model method) SMC() (in module psiphy.mcmc.importance_sampling) spherical_to_cartesian() (in module psiphy.utils.helpers) sub_fisher() (psiphy.forecasting.fisher.FisherMatrix method) summary() (psiphy.mcmc.mh_sampler.MHSampler method)

T

test_simulator() (psiphy.forecasting.fisher.FisherMatrix method) to_getdist() (psiphy.forecasting.fisher.FisherMatrix method) (psiphy.mcmc.nested_sampler.NestedSampler method) to_sbi() (psiphy.utils.prior.BasePrior method) (psiphy.utils.prior.UniformPrior method) to_scipy() (psiphy.utils.prior.BasePrior method) (psiphy.utils.prior.GaussianPrior method) (psiphy.utils.prior.LogUniformPrior method) (psiphy.utils.prior.UniformPrior method)

to_torch() (psiphy.utils.prior.BasePrior method) (psiphy.utils.prior.GaussianPrior method) (psiphy.utils.prior.LogUniformPrior method) (psiphy.utils.prior.UniformPrior method) tqdm (class in psiphy.forecasting.fisher) tqdm() (in module psiphy.mcmc.importance_sampling) (in module psiphy.sbi.abc_gp) (in module psiphy.sbi.rejection_abc)

U

UniformPrior (class in psiphy.utils.prior)

W

walk_parameter() (in module psiphy.plotting.corner) (in module psiphy.plotting.mcmc_chains)